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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000468.1_1571_1695_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1571 - 1695
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTGCC
5'SS Class:
major
3'SS Sequence:
CGTTCCTCGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
CTGCCCACACCA
Flanking Amino Acid:
RKMLLEAIMLLTATKAGRHA
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
63.5
36.3
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
69.9
0.45
1
65.6
36
Minor 5ss
27.3
-2.6
3.2
31.8
37.6
Minor BPS
43
-0.5
2
53.99
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009481
Chromosome:
PEDO01000468.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022167
918 - 2362
1445
ENSAPLT00000009871
21 - 2362
2342