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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000468.1_277_394_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
277 - 394
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCCGAG
5'SS Class:
major
3'SS Sequence:
CGTGTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TGGTTATTGACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.2
50.4
42.6
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
73.7
0.53
0.9
66.1
35.8
Minor 5ss
34.7
-1.7
3.5
46
49.3
Minor BPS
58
0.23
1.6
67.15
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009481
Chromosome:
PEDO01000468.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009871
21 - 2362
2342