Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000528.1_365_1521_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

365 - 1521

Intron Length:

1157

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGG|GCATGACAA

5'SS Class:

major

3'SS Sequence:

AATAAGACGGGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

ATGGTTTTAAAT

Flanking Amino Acid:

VIREATNLARGFRLEIRRQL

Intron Amino Acid Position:

115

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.5

0.44

1.3

51.4

41.4

Major BPS

90.4

0.7

90.2

19.3

Major PPT

-0.5

1.7

33.5

40.4

Minor 5ss

26.6

-2.7

3.9

Minor BPS

57.7

0.32

1.5

70.57

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029672

Chromosome:

PEDO01000528.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044120

21 - 1687

1667