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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000530.1_1383_1503_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1383 - 1503
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
TTCCCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GTGTCCTGATGT
Flanking Amino Acid:
LSAFAAVYVSMYFNSIISDS
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
62.7
43.4
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
74.4
0.55
0.7
65.8
30.3
Minor 5ss
29.6
-2.3
2.7
34.6
40.9
Minor BPS
49.1
0.01
2
69.59
46.8

Associated Gene:

Gene:
PLPPR3
Ensembl Gene ID:
ENSAPLG00000025490
Chromosome:
PEDO01000530.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030210
21 - 3089
3069