Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000545.1_1292_1384_F

Intron Information:

Intron Rank:

129431

Intron Class:

major

Intron Phase:

Intron Coordinates:

1292 - 1384

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGGGCA

5'SS Class:

major

3'SS Sequence:

GGTTTGTCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGGTGAC

U12 Branch Point Sequence:

CCGGTGGCACCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

64.5

Major BPS

45.4

-0.2

1.4

34.5

43.7

Major PPT

71.3

0.48

61.8

44.4

Minor 5ss

24.2

-3

3.2

26.5

Minor BPS

26.5

-1.8

2.3

28.21

37.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019617

Chromosome:

PEDO01000545.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040708

276 - 2712

2437