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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000569.1_35751_36247_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35751 - 36247
Intron Length:
497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTACCTTATTC
Flanking Amino Acid:
NYIYADIKREVNVYVKVFTN
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
81.2
33.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82
0.72
0.9
76.3
37.7
Minor 5ss
43.2
-0.7
2.9
57.8
46.8
Minor BPS
69.7
0.6
1.6
79.16
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015113
Chromosome:
PEDO01000569.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015751
34483 - 38106
3624