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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000569.1_65205_66595_R

Intron Information:

Intron Rank:
134394
Intron Class:
major
Intron Phase:
Intron Coordinates:
65205 - 66595
Intron Length:
1391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
GTCTCCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
GTCTCCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.1
44.6
Major BPS
77.3
0.68
1
81.5
27
Major PPT
77.9
0.63
0.8
71.7
32.8
Minor 5ss
39.3
-1.2
2.8
43.9
43.7
Minor BPS
69
0.59
1.8
75.93
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019558
Chromosome:
PEDO01000569.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037189
62743 - 67003
4261