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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000590.1_134_241_R

Intron Information:

Intron Rank:
142678
Intron Class:
major
Intron Phase:
Intron Coordinates:
134 - 241
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACCAAAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77.4
0.62
0.9
69.5
41.6
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
54
0.1
2
72.1
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024025
Chromosome:
PEDO01000590.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026554
21 - 1164
1144