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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000606.1_10473_10919_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10473 - 10919
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCGCA
5'SS Class:
major
3'SS Sequence:
TCTTCTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
ATTTGAATAAAT
Flanking Amino Acid:
IRPPFKKFSKGVAFFPLHIG
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
62
38.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
77.5
0.62
0.8
72
32.6
Minor 5ss
30.7
-2.2
3.2
30.5
42.8
Minor BPS
46.8
-0.1
2.3
74.33
41.6

Associated Gene:

Gene:
DCTN5
Ensembl Gene ID:
ENSAPLG00000010586
Chromosome:
PEDO01000606.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011021
10046 - 12260
2215