Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000606.1_18450_18933_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

18450 - 18933

Intron Length:

484

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TGCAAACACACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATGTAAA

U12 Branch Point Sequence:

CTGTCTGCAAAC

Flanking Amino Acid:

EVDIWSIGCIMYTLLVGKPP

Intron Amino Acid Position:

232

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

81.4

26.2

Major BPS

66.4

0.41

1.1

67.7

36.5

Major PPT

55.6

0.13

39.4

Minor 5ss

-2.1

2.7

37.8

40.1

Minor BPS

43.8

-0.4

2.2

55.19

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010637

Chromosome:

PEDO01000606.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011109

17566 - 23083

5518