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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000606.1_29843_30310_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29843 - 30310
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGCGGACC
5'SS Class:
major
3'SS Sequence:
CCTCTCGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAG
U12 Branch Point Sequence:
GCCACCTCAGCT
Flanking Amino Acid:
TSMRNQWLLIGHHELPPVVH
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
66.7
38.8
Major BPS
49.8
-0
1.5
59.3
39.1
Major PPT
70
0.45
0.9
61
35.1
Minor 5ss
27
-2.6
3.1
34.7
41.4
Minor BPS
47.8
-0
1.9
61.88
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010981
Chromosome:
PEDO01000606.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025021
29466 - 37047
7582