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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000606.1_33279_37039_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
33279 - 37039
Intron Length:
3761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTTTGACCA
5'SS Class:
weak_major
3'SS Sequence:
AGTGCCTCAAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
AGTGCCTCAAGA
Flanking Amino Acid:
SLYSAVTVPETL
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.2
45.5
36
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
46.3
-0.2
1.7
47.8
39.9
Minor 5ss
36.5
-1.5
2.9
43.5
38.3
Minor BPS
49.8
-0
2
62.85
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010981
Chromosome:
PEDO01000606.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025021
29466 - 37047
7582