Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000606.1_39384_39455_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39384 - 39455

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCGGTGGG

5'SS Class:

major

3'SS Sequence:

CCATCGCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCCAT

U12 Branch Point Sequence:

CCCCCGGGAACC

Flanking Amino Acid:

DLKQEIHSLTGLPPAMQKVM

Intron Amino Acid Position:

145

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.4

0.44

1.4

58.8

42.9

Major BPS

48.9

-0

1.3

39.1

Major PPT

0.34

0.9

57.6

Minor 5ss

26.1

-2.7

3.1

31.9

42.5

Minor BPS

36.9

-1

2.5

43.78

44.1

Associated Gene:

Gene:

UBFD1

Ensembl Gene ID:

ENSAPLG00000021421

Chromosome:

PEDO01000606.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022508

32975 - 39922

6948