Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000618.1_480_884_F

Intron Information:

Intron Rank:

145937

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

480 - 884

Intron Length:

405

Sequence Information:

Terminal Dinucleotides:

GC-GG

5'SS Sequence:

TGG|GCCATTTTG

5'SS Class:

major

3'SS Sequence:

TGGGCCATTTTGG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTGCCAT

U12 Branch Point Sequence:

TTTTGGGCCATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.7

0.25

1.4

57.5

46.9

Major BPS

47.8

-0.1

1.6

58.2

48.3

Major PPT

37.8

-0.7

3.1

51.9

42.7

Minor 5ss

28.5

-2.5

3.8

32.9

41.9

Minor BPS

33.6

-1.2

63.16

47.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028623

Chromosome:

PEDO01000618.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033222

21 - 2199

2179