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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000665.1_900_1044_F

Intron Information:

Intron Rank:
149257
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
900 - 1044
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCCCCAG
5'SS Class:
weak_major
3'SS Sequence:
GGGTCCCCAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAGACAT
U12 Branch Point Sequence:
GGGTCCCCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.3
0.22
1.2
46.9
45
Major BPS
51
0.03
1.1
58.7
38.1
Major PPT
49
-0
1.1
46.3
35.8
Minor 5ss
36.2
-1.6
3.2
46.8
48.5
Minor BPS
46
-0.3
2
55.95
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030261
Chromosome:
PEDO01000665.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033910
21 - 1555
1535