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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000713.1_1565_1641_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1565 - 1641
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAGCG
5'SS Class:
major
3'SS Sequence:
GCACCCGGTGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
TGACGCTGAGCA
Flanking Amino Acid:
KLYLEQLRQHEEEQAEEEEE
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
59.9
39.3
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
57.4
0.17
1.1
49.6
39
Minor 5ss
25.8
-2.8
3.1
31.6
42.2
Minor BPS
44.4
-0.4
2
56.02
42.2

Associated Gene:

Gene:
RRP9
Ensembl Gene ID:
ENSAPLG00000014269
Chromosome:
PEDO01000713.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014878
294 - 2121
1828