Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000713.1_1961_2061_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1961 - 2061

Intron Length:

101

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGCGCG

5'SS Class:

major

3'SS Sequence:

TTGCATCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTGCAT

U12 Branch Point Sequence:

TCGCCGCTGACG

Flanking Amino Acid:

AAAGRRRRPRGAGSGGKPRP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.1

56.7

42.7

Major BPS

57.3

0.18

1.6

71.4

45.1

Major PPT

72.2

0.5

0.9

66.1

35.5

Minor 5ss

30.8

-2.2

3.2

30.6

42.7

Minor BPS

42.3

-0.7

2.3

48.63

45.1

Associated Gene:

Gene:

RRP9

Ensembl Gene ID:

ENSAPLG00000014269

Chromosome:

PEDO01000713.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014878

294 - 2121

1828