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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000735.1_1053_1842_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1053 - 1842
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTATCCTGTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTCCCTTATCC
Flanking Amino Acid:
LASKVTRLKSLALDIDKDAE
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.2
37.4
Major BPS
84.4
0.85
1
84
34.5
Major PPT
77.9
0.63
0.9
72.7
37.4
Minor 5ss
37
-1.5
3
50
46.3
Minor BPS
74.9
0.76
1.5
84.18
34.6

Associated Gene:

Gene:
BET1L
Ensembl Gene ID:
ENSAPLG00000023869
Chromosome:
PEDO01000735.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020312
636 - 4083
3448
ENSAPLT00000043089
21 - 3858
3838