Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000735.1_708_960_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

708 - 960

Intron Length:

253

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGCGTTTA

5'SS Class:

major

3'SS Sequence:

TCCTTTTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGATAAA

U12 Branch Point Sequence:

ACTGATAAAACT

Flanking Amino Acid:

MVEVFGQNGSGVEDM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

Major BPS

63.5

0.33

1.2

64.3

39.6

Major PPT

82.8

0.74

0.7

76.2

32.4

Minor 5ss

37.4

-1.4

3.1

45.8

44.7

Minor BPS

42.3

-0.5

59.6

Associated Gene:

Gene:

BET1L

Ensembl Gene ID:

ENSAPLG00000023869

Chromosome:

PEDO01000735.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020312

636 - 4083

3448