Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000739.1_1478_1619_F

Intron Information:

Intron Rank:

128147

Intron Class:

major

Intron Phase:

Intron Coordinates:

1478 - 1619

Intron Length:

142

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGGCA

5'SS Class:

major

3'SS Sequence:

TTGTGGCTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTAAT

U12 Branch Point Sequence:

GTCCCCCTAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

68.6

36.2

Major BPS

69.6

0.49

1.1

69.5

Major PPT

0.36

1.1

58.2

47.3

Minor 5ss

29.6

-2.3

3.4

39.3

Minor BPS

53.1

-0

1.8

58.5

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019007

Chromosome:

PEDO01000739.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043850

21 - 1970

1950

ENSAPLT00000025029

21 - 1970

1950