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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000767.1_1024_1110_R

Intron Information:

Intron Rank:
140415
Intron Class:
major
Intron Phase:
Intron Coordinates:
1024 - 1110
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCAGT
5'SS Class:
major
3'SS Sequence:
TTCTTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTCCTTGAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
70.5
41.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.2
0.88
0.7
85.1
28
Minor 5ss
35.8
-1.6
3
45.5
44.6
Minor BPS
57.5
0.31
1.8
76.82
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022924
Chromosome:
PEDO01000767.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029253
21 - 1590
1570