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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000781.1_3384_3620_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3384 - 3620
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCACACCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
CCTTCCTTCACA
Flanking Amino Acid:
DSRKVKVNIRVPPAPLSPPR
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.2
Major BPS
67.8
0.44
1
75
30.1
Major PPT
67.5
0.4
0.9
58.7
36.4
Minor 5ss
25.4
-2.8
3.5
36.8
47.7
Minor BPS
68.8
0.59
1.8
74.7
43.3

Associated Gene:

Gene:
TIE1
Ensembl Gene ID:
ENSAPLG00000009614
Chromosome:
PEDO01000781.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021148
21 - 5469
5449
ENSAPLT00000010056
21 - 5469
5449
ENSAPLT00000021592
24 - 5410
5387