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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000781.1_342_441_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
342 - 441
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGCGGAGC
5'SS Class:
major
3'SS Sequence:
TCCCATCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
GTGCCCCTAACC
Flanking Amino Acid:
AARPHLHVERGEETILQFNS
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.1
55
44.1
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
68.9
0.43
1
64.7
36.1
Minor 5ss
25.7
-2.8
3.1
24.9
37
Minor BPS
61
0.32
1.7
69.9
40.8

Associated Gene:

Gene:
TIE1
Ensembl Gene ID:
ENSAPLG00000009614
Chromosome:
PEDO01000781.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010056
21 - 5469
5449