Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000781.1_756_1289_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

756 - 1289

Intron Length:

534

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

CTCCCCTCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTCAG

U12 Branch Point Sequence:

TCCTCCCTCCCT

Flanking Amino Acid:

QPVKAKTLGDGALSVPPSLG

Intron Amino Acid Position:

541

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

0.9

64.9

41.1

Major BPS

45.3

-0.3

1.7

51.1

46.3

Major PPT

68.9

0.43

0.9

64.9

30.7

Minor 5ss

26.8

-2.7

28.2

38.6

Minor BPS

38.2

-0.8

3.7

67.94

48.6

Associated Gene:

Gene:

TIE1

Ensembl Gene ID:

ENSAPLG00000009614

Chromosome:

PEDO01000781.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021148

21 - 5469

5449

ENSAPLT00000010056

21 - 5469

5449