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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000784.1_1323_2453_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1323 - 2453
Intron Length:
1131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGATC
5'SS Class:
major
3'SS Sequence:
TTTGTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTGCAC
U12 Branch Point Sequence:
CTGCACTGGACC
Flanking Amino Acid:
NISTWVFSNAGRHESQEPFL
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
69.9
40.6
Major BPS
47.5
-0.1
1.3
57
39.5
Major PPT
86.7
0.82
0.7
81.5
30.6
Minor 5ss
35.8
-1.6
3.4
51.8
45
Minor BPS
47.6
-0.2
1.7
57.09
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017513
Chromosome:
PEDO01000784.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037159
919 - 2610
1692