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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000793.1_204_752_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
204 - 752
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCGGG
5'SS Class:
major
3'SS Sequence:
TTTCCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCATTTTTACCC
Flanking Amino Acid:
ALMHDKLRHELPNFFLKIPD
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.2
58
47.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.4
0.66
0.7
73.8
24.3
Minor 5ss
41.3
-1
3.3
55.9
48.3
Minor BPS
52
0.04
1.6
57.59
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031129
Chromosome:
PEDO01000793.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023931
21 - 1224
1204