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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000793.1_43_114_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43 - 114
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCGCC
5'SS Class:
major
3'SS Sequence:
GCTGTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
GACCCCAAAACT
Flanking Amino Acid:
FVNHPLRLHTRGRAMYQV
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65.5
42
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
69.1
0.43
0.9
61.3
35.2
Minor 5ss
38.1
-1.3
3.3
52.1
44.7
Minor BPS
47.7
-0
2
64.7
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031129
Chromosome:
PEDO01000793.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023931
21 - 1224
1204