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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000807.1_869_1095_R

Intron Information:

Intron Rank:
148444
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
869 - 1095
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCATGGG
5'SS Class:
major
3'SS Sequence:
TGGGATCCCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCCCAA
U12 Branch Point Sequence:
GATCCCAAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.3
52.7
44.4
Major BPS
54.3
0.11
1.2
64.5
33.7
Major PPT
50.9
0.02
1.1
48.7
39.4
Minor 5ss
26.7
-2.7
3.1
32.8
42
Minor BPS
51.4
0.12
2
73.03
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027238
Chromosome:
PEDO01000807.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026787
21 - 1745
1725