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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000869.1_1709_1790_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1709 - 1790
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
GCGTCGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
GGTCCCCTAACG
Flanking Amino Acid:
YCIEAFSDSLRRDMRHFGVK
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
66.5
0.37
1
58.1
38.5
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
58.1
0.12
1.8
63.99
42.9

Associated Gene:

Gene:
RDH5
Ensembl Gene ID:
ENSAPLG00000020015
Chromosome:
PEDO01000869.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018518
1102 - 2002
901