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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000870.1_1631_1821_F

Intron Information:

Intron Rank:
134569
Intron Class:
major
Intron Phase:
Intron Coordinates:
1631 - 1821
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGCAGT
5'SS Class:
major
3'SS Sequence:
GTCTCTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTCCAT
U12 Branch Point Sequence:
CTCTGCTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.2
73.9
42.7
Major BPS
48.8
-0
1.5
60.4
45.8
Major PPT
78.8
0.65
0.8
69.7
36.7
Minor 5ss
37.5
-1.4
2.8
50
45.9
Minor BPS
44.1
-0.3
2.3
63.16
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022337
Chromosome:
PEDO01000870.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022333
128 - 2820
2693