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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000870.1_341_909_F

Intron Information:

Intron Rank:
134571
Intron Class:
major
Intron Phase:
Intron Coordinates:
341 - 909
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGAGAG
5'SS Class:
major
3'SS Sequence:
CCTTGCTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TACCACTCACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
59.7
39.7
Major BPS
64.9
0.37
1
67
29.8
Major PPT
68.9
0.43
1
60.7
40.3
Minor 5ss
31
-2.2
3.3
34.8
42.3
Minor BPS
44.7
-0.4
1.9
54.57
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022337
Chromosome:
PEDO01000870.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022333
128 - 2820
2693