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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000898.1_1592_1670_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1592 - 1670
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGACCAA
U12 Branch Point Sequence:
GGGGCGATGACC
Flanking Amino Acid:
LRLLKRRPASGKHYACSSYG
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.1
37.5
Major BPS
46.5
-0.2
1.3
52.8
42.7
Major PPT
85.5
0.8
0.7
77
31.7
Minor 5ss
37.8
-1.4
3
47.1
48.3
Minor BPS
40.7
-0.7
2.3
48.01
41.8

Associated Gene:

Gene:
ZNF414
Ensembl Gene ID:
ENSAPLG00000021517
Chromosome:
PEDO01000898.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044869
1125 - 3596
2472