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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000909.1_2018_2733_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2018 - 2733
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGGGCT
5'SS Class:
major
3'SS Sequence:
CTTGCCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
AGCTTCTCACCG
Flanking Amino Acid:
RARPPGRPVSGHGMDSRPAM
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
65.5
37.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
72.9
0.52
0.9
66.4
34.7
Minor 5ss
30.6
-2.2
3.8
43.8
46
Minor BPS
46.6
-0.3
1.9
50.14
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011045
Chromosome:
PEDO01000909.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011512
114 - 5255
5142