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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000954.1_1299_1557_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1299 - 1557
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACACCAACT
Flanking Amino Acid:
MCESLWEPDMEPDHLFETIS
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.1
0.72
0.8
80.5
31.5
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
49.5
0.04
2.2
79.82
41.2

Associated Gene:

Gene:
PSMB3
Ensembl Gene ID:
ENSAPLG00000004245
Chromosome:
PEDO01000954.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004357
4 - 2289
2286