About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000954.1_719_1120_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
719 - 1120
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAA
U12 Branch Point Sequence:
CTTTTCTTCACA
Flanking Amino Acid:
SMVSNLLYERRFGPYYTEPV
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
80
33.6
Major BPS
47.9
-0.1
0.9
51.7
28.4
Major PPT
87.9
0.85
0.7
83.3
25.1
Minor 5ss
37.7
-1.4
3.3
53.4
43.8
Minor BPS
68.5
0.58
1.7
78.35
38.8

Associated Gene:

Gene:
PSMB3
Ensembl Gene ID:
ENSAPLG00000004245
Chromosome:
PEDO01000954.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004357
4 - 2289
2286