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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01000954.1_93_610_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
93 - 610
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TCTCTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTGGCTCTAACG
Flanking Amino Acid:
LAGLATDVQTVAQRLKFRLN
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
68.5
37.9
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
89
0.88
0.6
84.2
23.7
Minor 5ss
35.9
-1.6
3.2
45.9
42.3
Minor BPS
49.1
-0.2
1.9
55.2
46.3

Associated Gene:

Gene:
PSMB3
Ensembl Gene ID:
ENSAPLG00000004245
Chromosome:
PEDO01000954.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004357
4 - 2289
2286