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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001022.1_2289_2590_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2289 - 2590
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCGAAC
U12 Branch Point Sequence:
CCTCCCCGAACC
Flanking Amino Acid:
AKKKRKSKHKRHASSSEDFS
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
44
-0.3
1.3
46.9
34.4
Major PPT
79.7
0.67
0.8
72.8
32
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
49.4
-0
1.9
61.63
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016856
Chromosome:
PEDO01001022.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019606
1914 - 5229
3316