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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001022.1_2702_2818_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2702 - 2818
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
GCCTCTCCCAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
TCGTCACTAACT
Flanking Amino Acid:
YRDYSPPYSSSHQQYPSSHS
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.3
66.6
44.7
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
59.7
0.22
1
59
30.5
Minor 5ss
38.7
-1.3
3
56.4
40.7
Minor BPS
58
0.33
2
77.96
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016856
Chromosome:
PEDO01001022.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019606
1914 - 5229
3316