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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001033.1_255_342_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
255 - 342
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCGCCCCACCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCCTTCTGATCC
Flanking Amino Acid:
RTDHEGLLAKELEDTNKWGL
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
59.8
0.22
0.9
50.2
33.1
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
51.8
0.03
1.8
62.26
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027403
Chromosome:
PEDO01001033.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036244
21 - 3645
3625