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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001033.1_691_772_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
691 - 772
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCCGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTACAC
U12 Branch Point Sequence:
CCCACCTACACC
Flanking Amino Acid:
HVLLSTPALEAVFTDLEIMA
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
49.2
-0
1.1
58.3
36.8
Major PPT
69.7
0.44
0.8
60.6
35.2
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
44.6
-0.4
2.1
50.09
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027403
Chromosome:
PEDO01001033.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036244
21 - 3645
3625