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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001055.1_7273_9293_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7273 - 9293
Intron Length:
2021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCCTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTCATCTCACCT
Flanking Amino Acid:
LDEAVSQSTQFHDKIEPMLE
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
82.4
31.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
74.1
0.54
0.8
65.5
36.1
Minor 5ss
43.7
-0.7
3
61.2
43.7
Minor BPS
47.3
-0.1
1.9
63.96
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017604
Chromosome:
PEDO01001055.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025646
5059 - 9422
4364