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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001061.1_8381_9943_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8381 - 9943
Intron Length:
1563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGGTGG
5'SS Class:
major
3'SS Sequence:
TCTTTCTATTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTATTTTAACA
Flanking Amino Acid:
FAVLEKEKELAHHQSGHNSG
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
61.5
45.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82
0.72
0.8
81.8
29
Minor 5ss
35.1
-1.7
3.4
46.9
48.5
Minor BPS
71.7
0.68
1.2
76.38
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021448
Chromosome:
PEDO01001061.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030760
7933 - 12708
4776