About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001072.1_382_537_R


Intron Information:

Intron Rank:
148205

Intron Class:
major-like

Intron Phase:

Intron Coordinates:
382 - 537

Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-GG

5'SS Sequence:
TGG|GTGCTATGG

5'SS Class:
weak_major

3'SS Sequence:
GGGGCACCCATGG|G

3'SS Class:
degenerate_major

U2 Branch Point Sequence:
GTGCTAT

U12 Branch Point Sequence:
GTTGGGGCACCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
55.2
0.12
1.1
43.4
40.8

Major BPS
46.4
-0.2
1.5
44.2
48.3

Major PPT
32
-1
3
32.1
31.1

Minor 5ss
30.5
-2.2
3.1
30
42.9

Minor BPS
28.2
-1.6
2.7
42.35
44.8

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
PEDO01001072.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 987
967

21 - 987
967