Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001078.1_1179_1335_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1179 - 1335

Intron Length:

157

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTGAGTATC

5'SS Class:

major

3'SS Sequence:

CCTCTCCTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTGAC

U12 Branch Point Sequence:

CTCTCCTTACAG

Flanking Amino Acid:

SFSEKQAAELSWRRFLMSHN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.1

74.3

36.2

Major BPS

0.22

1.2

52.4

43.3

Major PPT

82.3

0.73

0.7

75.7

26.5

Minor 5ss

36.8

-1.5

2.9

46.6

41.8

Minor BPS

55.1

0.02

1.9

60.06

47.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030831

Chromosome:

PEDO01001078.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020827

249 - 2567

2319