Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001085.1_373_921_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

373 - 921

Intron Length:

549

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGG|GCGGGGGGG

5'SS Class:

major

3'SS Sequence:

CCTTAGCGCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTACCAC

U12 Branch Point Sequence:

CAGCCCTTACCA

Flanking Amino Acid:

NHVFMGCRSVGLVLSERNRP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.3

0.36

1.2

54.6

Major BPS

55.7

0.14

1.3

66.8

39.4

Major PPT

62.9

0.29

53.4

41.2

Minor 5ss

-4.5

3.6

28.6

Minor BPS

56.2

0.19

1.7

61.84

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028246

Chromosome:

PEDO01001085.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043815

167 - 1027

861