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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001153.1_431_1647_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
431 - 1647
Intron Length:
1217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTTGCCATAATG
Flanking Amino Acid:
GSESPIVVVLSGSMEPAFHR
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
84.7
0.78
0.8
80.6
31.5
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
63.7
0.29
1.8
72.18
41

Associated Gene:

Gene:
SEC11C
Ensembl Gene ID:
ENSAPLG00000030800
Chromosome:
PEDO01001153.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043242
53 - 1941
1889