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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001168.1_210_289_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
210 - 289
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGAGCT
5'SS Class:
major
3'SS Sequence:
GCCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGCGAC
U12 Branch Point Sequence:
GTGCCCCGACCC
Flanking Amino Acid:
TQRASSLDTRGSPKRRQFQR
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
68.6
36.5
Major BPS
46
-0.2
1.3
41.6
40.4
Major PPT
64.2
0.32
0.8
53.7
31
Minor 5ss
26.2
-2.7
3.5
38.7
46.6
Minor BPS
43.5
-0.5
2
54.65
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022557
Chromosome:
PEDO01001168.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024690
134 - 1893
1760