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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001168.1_474_731_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
474 - 731
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
GTGGTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
CCTGCCGTGACG
Flanking Amino Acid:
SPASPPPSLGRLEPGEGGAS
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
62.5
0.28
1
54.5
41.4
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
47.2
-0.3
2.2
53.7
47.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022557
Chromosome:
PEDO01001168.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024690
134 - 1893
1760