Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001170.1_239_3859_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

239 - 3859

Intron Length:

3621

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGCAAC

5'SS Class:

strong_major

3'SS Sequence:

CCCTCTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCCCAA

U12 Branch Point Sequence:

ACCTTCCCAACA

Flanking Amino Acid:

GCWGREDQCLGTLHNTDMSC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

72.3

39.5

Major BPS

63.1

0.33

1.2

72.7

34.3

Major PPT

80.7

0.69

0.7

72.1

32.5

Minor 5ss

38.3

-1.3

3.1

50.7

46.2

Minor BPS

47.9

-0.1

1.9

58.12

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027082

Chromosome:

PEDO01001170.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028116

21 - 4083

4063