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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01001179.1_11286_11375_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11286 - 11375
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGACCC
5'SS Class:
major
3'SS Sequence:
CCCCCTCACGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
AAACCCTTCATT
Flanking Amino Acid:
RQNRNRGQGYVGGQRRGYDN
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.1
50.8
40.5
Major BPS
75
0.62
1.1
77.2
36
Major PPT
66.3
0.37
0.8
60.7
28
Minor 5ss
26.9
-2.7
3.2
35
41
Minor BPS
56
0.27
1.7
70.28
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004162
Chromosome:
PEDO01001179.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004265
2617 - 12703
10087